Basic Information
Locus ID:
GOSA_00015416
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig71 | 940084 | 946844 | + | GOSA_00015416 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 69,109.20 Da | 47.76 | 81.64 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 228 | 404 | 8.25089E-60 | - |
| CDD | cd18794 | SF2_C_RecQ | 405 | 538 | 1.0613E-65 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 423 | 528 | 5.6E-16 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 541 | 610 | 1.5E-12 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 236 | 367 | 2.1E-11 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 209 | 543 | 2.18E-31 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 403 | 610 | 3.24E-45 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 197 | 370 | 4.6E-53 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 405 | 613 | 6.5E-61 | IPR027417 |
| SMART | SM00487 | ultradead3 | 230 | 413 | 2.6E-11 | IPR014001 |
| SMART | SM00490 | helicmild6 | 447 | 529 | 1.2E-23 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 384 | 613 | 3.8E-74 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 242 | 401 | 11.640816 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 419 | 570 | 18.625351 | IPR001650 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_021742657.1 | ATP-dependent DNA helicase Q-like 1 [Chenopodium quinoa] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QQ50 | ATP-dependent DNA helicase OS=Spinacia oleracea OX=3562 GN=SOVF_153870 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology