Basic Information
Locus ID:
GOSA_00015387
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig71 | 710142 | 721622 | + | GOSA_00015387 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.70 | 119,033.01 Da | 38.82 | 81.80 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 415 | 452 | 0.0051 | IPR001680 |
| SUPERFAMILY | SSF50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | 304 | 407 | 9.42E-9 | IPR011044 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 375 | 880 | 1.39E-41 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 769 | 1028 | 1.69E-34 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 534 | 642 | 4.6E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 279 | 505 | 3.6E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 900 | 1039 | 2.5E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 668 | 899 | 3.4E-23 | IPR015943 |
| SMART | SM00320 | WD40_4 | 411 | 452 | 7.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 498 | 541 | 94.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 306 | 345 | 0.01 | IPR001680 |
| SMART | SM00320 | WD40_4 | 761 | 796 | 100.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 544 | 584 | 3.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 454 | 495 | 0.01 | IPR001680 |
| SMART | SM00320 | WD40_4 | 931 | 973 | 7.9 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 6.7E-14 | IPR006595 |
| SMART | SM00667 | Lish | 4 | 36 | 5.3E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 366 | 405 | 5.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 799 | 839 | 4.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 842 | 881 | 0.018 | IPR001680 |
| SMART | SM00320 | WD40_4 | 987 | 1028 | 130.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 849 | 884 | 8.966513 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 849 | 890 | 10.976305 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 312 | 354 | 9.372231 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.475842 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.767425 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 418 | 461 | 8.870959 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 439 | 453 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27030.1 | TOPLESS-related 3. | 0 |
| RefSeq | XP_021742617.1 | topless-related protein 3-like [Chenopodium quinoa] | 0 |
| Q84JM4 | Topless-related protein 3 OS=Arabidopsis thaliana OX=3702 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RIJ6 | Topless-related protein 3-like OS=Spinacia oleracea OX=3562 GN=SOVF_060520 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology