Basic Information
Locus ID:
GOSA_00015287
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Short Name:
UBP15
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig263 | 1861647 | 1880733 | + | GOSA_00015287 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 97,577.54 Da | 50.85 | 72.61 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 358 | 663 | 2.89972E-155 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 359 | 662 | 1.7E-43 | IPR001394 |
| Pfam | PF01753 | MYND finger | 77 | 114 | 1.0E-8 | IPR002893 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 357 | 665 | 1.88E-84 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 72 | 117 | 4.36E-11 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 69 | 117 | 1.8E-11 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 356 | 669 | 1.7E-87 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 77 | 114 | 11.481678 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 359 | 665 | 49.74511 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 360 | 375 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 77 | 114 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 685 | 705 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17110.1 | ubiquitin-specific protease 15. Encodes a ubiquitin-specific protease, and its activity has been confirmed in an in vitro assay. ubp15 mutants have defects in cell proliferation, and the associated processes of leaf, root, stem, flower, and silique development. UBP15 can be found in the nucleus and cytoplasm in transient assays. Though UBP15 is expressed in many tissues, UBP15 transcript levels are higher in rosette leaves and inflorescences than in other parts of the plant. | 0 |
| RefSeq | XP_010694568.1 | ubiquitin carboxyl-terminal hydrolase 15 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FPS9 | Ubiquitin carboxyl-terminal hydrolase 15 OS=Arabidopsis thaliana OX=3702 GN=UBP15 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9RRV6 | Ubiquitin carboxyl-terminal hydrolase 15 OS=Spinacia oleracea OX=3562 GN=SOVF_034190 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology