Basic Information
Locus ID:
GOSA_00014885
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig19 | 473011 | 478161 | + | GOSA_00014885 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.64 | 52,574.26 Da | 48.70 | 73.62 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09991 | HDAC_classI | 29 | 366 | 0.0 | - |
| Pfam | PF00850 | Histone deacetylase domain | 43 | 364 | 1.5E-85 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 25 | 417 | 8.63E-125 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 14 | 432 | 8.1E-136 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 115 | 467 | 5.8E-174 | IPR003084 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 10 | 114 | 2.6E-28 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 301 | 311 | 1.7E-24 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 45 | 62 | 1.6E-13 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 78 | 96 | 1.6E-13 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 184 | 207 | 1.7E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 216 | 231 | 1.7E-24 | IPR000286 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 425 | 470 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63110.1 | histone deacetylase 6. RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing. | 0 |
| RefSeq | XP_021762854.1 | histone deacetylase 6-like [Chenopodium quinoa] | 0 |
| Q9FML2 | Histone deacetylase 6 OS=Arabidopsis thaliana OX=3702 GN=HDA6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RE39 | Histone deacetylase OS=Spinacia oleracea OX=3562 GN=SOVF_077050 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology