Basic Information
Locus ID:
GOSA_00014366
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig162 | 1521387 | 1529696 | - | GOSA_00014366 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 82,798.53 Da | 37.95 | 83.11 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 267 | 701 | 1.3E-36 | IPR001525 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 265 | 704 | 6.04E-79 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 206 | 323 | 1.8E-37 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 324 | 509 | 6.1E-81 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 604 | 697 | 2.2E-26 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 510 | 603 | 1.3E-26 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 40 | 205 | 1.2E-44 | IPR043151 |
| SMART | SM00439 | BAH_4 | 101 | 220 | 2.4E-11 | IPR001025 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 268 | 700 | 5.0E-35 | IPR001525 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 265 | 711 | 47.98727 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 101 | 220 | 16.515022 | IPR001025 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 440 | 453 | 1.2E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 394 | 408 | 1.2E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 266 | 282 | 1.2E-11 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 242 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 256 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_021771965.1 | DNA (cytosine-5)-methyltransferase CMT3-like [Chenopodium quinoa] | 0 |
| Q94F88 | DNA (cytosine-5)-methyltransferase CMT3 OS=Arabidopsis thaliana OX=3702 GN=CMT3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803KLX9 | Cytosine-specific methyltransferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology