Basic Information
Locus ID:
GOSA_00014214
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig546 | 1926638 | 1927960 | + | GOSA_00014214 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.36 | 17,257.58 Da | 43.98 | 97.36 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 5 | 43 | 7.7E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 5 | 83 | 5.49E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 45 | 9.7E-7 | - |
| SMART | SM00256 | fbox_2 | 6 | 46 | 8.7E-7 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 46 | 10.583739 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G49990.1 | F-box family protein. | 0 |
| RefSeq | XP_048501650.1 | uncharacterized protein LOC104884905 [Beta vulgaris subsp. vulgaris] | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25372 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah001202, Ah001206, Ah022052 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg29762, Sbi_jg29763, Sbi_jg29764, Sbi_jg30203 ... |
| Amaranthaceae | Salicornia europaea | 6 | Seu_jg14445, Seu_jg14446, Seu_jg14451, Seu_jg18609 ... |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014214 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl13216, Sgl18431 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000052662 |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.6AG0016190, CQ.Regalona.r1.6BG0017350 ... |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG26.203 |