Basic Information
Locus ID:
GOSA_00014153
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig546 | 1397863 | 1403050 | - | GOSA_00014153 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.11 | 57,649.20 Da | 36.46 | 88.51 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 451 | 476 | 0.001 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 431 | 480 | 1.2E-8 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 17 | 88 | 5.76E-5 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 424 | 476 | 5.0E-6 | - |
| SMART | SM00256 | fbox_2 | 18 | 59 | 13.0 | IPR001810 |
| SMART | SM00256 | fbox_2 | 439 | 480 | 0.36 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021717831.1 | F-box/kelch-repeat protein At3g23880-like [Chenopodium quinoa] | 0 |
| TrEMBL | A0A445BPX8 | F-box domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_A09g046479 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 9 | Ah018602, Ah018642, Ah019997, Ah021970, Ah021971, Ah022635 ... |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg56203, Sbi_jg56204 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26671 |
| Amaranthaceae | Suaeda aralocaspica | 11 | GOSA_00014153, GOSA_00014155, GOSA_00014156, GOSA_00014159 ... |
| Amaranthaceae | Suaeda glauca | 18 | Sgl12082, Sgl12087, Sgl12088, Sgl12091, Sgl12194, Sgl12277 ... |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000015744, gene:ENSEOMG00000043764 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0015240, CQ.Regalona.r1.3BG0014600 |