halophFGD

Basic Information

Locus ID: GOSA_00014151

Species & Taxonomic ID: Suaeda aralocaspica & 224144

Genome Assembly: GCA_016808085.1

Description: Pentatricopeptide repeat-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Contig546	1368808	1383548	-	GOSA_00014151

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.61	178,522.02 Da	33.44	80.53	-0.17

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd09612	Jacalin	1404	1530	9.68341E-45	IPR033734
CDD	cd09612	Jacalin	1204	1333	1.4122E-40	IPR033734
CDD	cd09612	Jacalin	961	1091	6.6555E-51	IPR033734
Pfam	PF13041	PPR repeat family	581	628	6.9E-9	IPR002885
Pfam	PF01535	PPR repeat	114	138	3.8E-4	IPR002885
Pfam	PF01535	PPR repeat	412	439	1.1E-6	IPR002885
Pfam	PF13041	PPR repeat family	444	483	1.5E-7	IPR002885
Pfam	PF01419	Jacalin-like lectin domain	961	1092	1.3E-33	IPR001229
Pfam	PF01419	Jacalin-like lectin domain	1204	1333	1.2E-28	IPR001229
Pfam	PF01419	Jacalin-like lectin domain	1401	1530	7.5E-30	IPR001229
Pfam	PF14432	DYW family of nucleic acid deaminases	756	875	5.6E-20	IPR032867
Pfam	PF13041	PPR repeat family	239	284	1.2E-11	IPR002885
Pfam	PF13041	PPR repeat family	308	356	1.2E-10	IPR002885
Pfam	PF01419	Jacalin-like lectin domain	1539	1593	1.9E-11	IPR001229
Pfam	PF01535	PPR repeat	657	681	0.15	IPR002885
Pfam	PF01535	PPR repeat	384	410	1.5E-4	IPR002885
Pfam	PF01535	PPR repeat	140	170	0.056	IPR002885
Pfam	PF01535	PPR repeat	484	512	3.4E-5	IPR002885
SUPERFAMILY	SSF51101	Mannose-binding lectins	950	1092	2.09E-44	IPR036404
SUPERFAMILY	SSF51101	Mannose-binding lectins	1192	1332	6.67E-37	IPR036404
SUPERFAMILY	SSF51101	Mannose-binding lectins	1530	1592	1.96E-16	IPR036404
SUPERFAMILY	SSF51101	Mannose-binding lectins	1390	1530	3.79E-41	IPR036404
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	475	544	5.2E-8	IPR011990
Gene3D	G3DSA:2.100.10.30	-	1531	1594	1.3E-20	IPR036404
Gene3D	G3DSA:2.100.10.30	-	1381	1530	8.2E-52	IPR036404
Gene3D	G3DSA:2.100.10.30	-	1185	1333	3.7E-46	IPR036404
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	553	744	6.4E-30	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	196	287	1.8E-23	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	328	474	7.8E-38	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	48	195	5.4E-26	IPR011990
Gene3D	G3DSA:2.100.10.30	-	938	1090	4.6E-57	IPR036404
SMART	SM00915	Jacalin_2	1204	1334	4.5E-36	IPR001229
SMART	SM00915	Jacalin_2	961	1092	2.5E-45	IPR001229
SMART	SM00915	Jacalin_2	1401	1532	1.0E-43	IPR001229
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	584	617	1.0E-6	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	311	345	4.4E-7	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	113	139	5.2E-4	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	484	516	5.9E-6	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	447	481	1.9E-5	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	241	274	2.0E-7	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	384	411	1.1E-4	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	213	240	6.5E-4	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	140	174	1.7E-4	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	276	310	1.9E-5	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	412	446	1.1E-6	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	274	308	11.103854	IPR002885
ProSiteProfiles	PS51752	Jacalin-type lectin domain profile.	1193	1334	44.596035	IPR001229
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	309	343	11.651919	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	138	172	10.05157	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	481	515	11.958836	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	582	616	11.608074	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	410	444	11.498462	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	107	137	8.95544	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	445	479	11.049048	IPR002885
ProSiteProfiles	PS51752	Jacalin-type lectin domain profile.	1390	1533	49.895283	IPR001229
ProSiteProfiles	PS51752	Jacalin-type lectin domain profile.	950	1092	55.044464	IPR001229
ProSiteProfiles	PS51752	Jacalin-type lectin domain profile.	1541	1594	18.268623	IPR001229
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	239	273	13.504379	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	379	409	9.13082	IPR002885

Gene Ontology

Molecular Function:

GO:0005515 (protein binding) GO:0008270 (zinc ion binding) GO:0030246 (carbohydrate binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G19715.1	Mannose-binding lectin superfamily protein.
RefSeq	XP_021759624.1	uncharacterized protein LOC110724509 [Chenopodium quinoa]
Swiss-Prot	F4HQX1	Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1
TrEMBL	A0A803LKG9	DYW_deaminase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg10582, jg13569, jg22875, jg27248
Aizoaceae	Mesembryanthemum crystallinum	2	gene_23077, gene_23079
Amaranthaceae	Atriplex hortensis	2	Ah011355, Ah023472
Amaranthaceae	Beta vulgaris	4	BVRB_1g006640, BVRB_1g006650, BVRB_1g006670, BVRB_9g211560
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg28803, Sbi_jg3146, Sbi_jg3153, Sbi_jg39146
Amaranthaceae	Salicornia europaea	2	Seu_jg11011, Seu_jg6762
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00000023, GOSA_00009615, GOSA_00014151
Amaranthaceae	Suaeda glauca	9	Sgl11510, Sgl11514, Sgl11516, Sgl11596, Sgl11600, Sgl16965 ... Sgl16968, Sgl17093, Sgl17097
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000013345, gene:ENSEOMG00000013653 ... gene:ENSEOMG00000015107, gene:ENSEOMG00000033716, gene:ENSEOMG00000035061, gene:ENSEOMG00000039654, gene:ENSEOMG00000047367, gene:ENSEOMG00000049597, gene:ENSEOMG00000052705
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.1AG0008880, CQ.Regalona.r1.1BG0016950 ... CQ.Regalona.r1.1BG0016970, CQ.Regalona.r1.7AG0015310, CQ.Regalona.r1.9BG0011020
Anacardiaceae	Pistacia vera	1	pistato.v30116130
Apiaceae	Apium graveolens	4	Ag1G00379, Ag2G02820, Ag4G02274, Ag6G01416
Arecaceae	Cocos nucifera	2	COCNU_06G013050, COCNU_06G013120
Arecaceae	Phoenix dactylifera	2	gene-LOC103717797, gene-LOC103719297
Asparagaceae	Asparagus officinalis	3	AsparagusV1_03.2115.V1.1, AsparagusV1_05.2895.V1.1 ... AsparagusV1_08.2928.V1.1
Asteraceae	Flaveria trinervia	6	Ftri10G02662, Ftri10G07324, Ftri10G25229, Ftri10G27720 ... Ftri10G32015, Ftri18G05095
Brassicaceae	Arabidopsis thaliana	2	AT1G19715.3, AT1G73040.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10007145m.g.v1.0, Thhalv10019210m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g17550.v2.2, Sp5g28000.v2.2
Brassicaceae	Brassica nigra	3	BniB03g008330.2N, BniB04g034420.2N, BniB05g070250.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G0901, Ceq03G0975
Casuarinaceae	Casuarina glauca	2	Cgl02G0914, Cgl03G1061
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno10g09320, gene.Cymno16g03180
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g03190, gene.Thate01g03210, gene.Thate09g07520
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-1340
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.13, evm.TU.LG06.628
Plantaginaceae	Plantago ovata	1	Pov_00015244
Plumbaginaceae	Limonium bicolor	12	Lb0G36806, Lb0G37360, Lb0G38063, Lb0G38278, Lb0G38317 ... Lb1G00549, Lb1G00551, Lb1G00554, Lb1G02726, Lb2G09419, Lb7G34303, Lb8G35786
Poaceae	Echinochloa crus-galli	9	AH02.3457, AH05.1812, AH08.2131, BH02.3499, BH05.1978 ... CH02.3041, CH02.3531, CH05.2044, CH08.2422
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_1AG0035380, gene-QOZ80_1BG0080450 ... gene-QOZ80_1BG0085430, gene-QOZ80_5AG0364930, gene-QOZ80_5AG0367290, gene-QOZ80_5BG0412790, gene-QOZ80_5BG0415010
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.1HG0076420.1, HORVU.MOREX.r3.1HG0080180.1 ... HORVU.MOREX.r3.3HG0223290.1, HORVU.MOREX.r3.3HG0292920.1, HORVU.MOREX.r3.7HG0682630.1
Poaceae	Lolium multiflorum	14	gene-QYE76_000100, gene-QYE76_014812, gene-QYE76_016264 ... gene-QYE76_017484, gene-QYE76_024985, gene-QYE76_030195, gene-QYE76_048484, gene-QYE76_048486, gene-QYE76_049155, gene-QYE76_049156, gene-QYE76_049165, gene-QYE76_049168, gene-QYE76_049169, gene-QYE76_049171
Poaceae	Oryza coarctata	7	Oco02G018700, Oco02G022290, Oco09G013680, Oco09G015600 ... Oco10G013760, Oco10G015470, Oco15G010450
Poaceae	Oryza sativa	2	LOC_Os01g51050.1, LOC_Os05g43240.1
Poaceae	Paspalum vaginatum	5	gene-BS78_03G250500, gene-BS78_03G294300, gene-BS78_K113200 ... gene-BS78_09G195900, gene-BS78_09G219000
Poaceae	Puccinellia tenuiflora	12	Pt_Chr0205493, Pt_Chr0205497, Pt_Chr0206968, Pt_Chr0206969 ... Pt_Chr0403695, Pt_Chr0503873, Pt_Chr0503896, Pt_Chr0504260, Pt_Chr0504311, Pt_Chr0601571, Pt_Chr0601601, Pt_Chr0700174
Poaceae	Sporobolus alterniflorus	11	Chr01G014880, Chr02G008190, Chr02G011660, Chr05G025350 ... Chr12G022010, Chr18G013400, Chr18G015100, Chr20G001510, Chr22G002450, Chr22G004290, Chr29G001880
Poaceae	Thinopyrum elongatum	4	Tel1E01G530900, Tel1E01G591000, Tel3E01G506800 ... Tel7E01G451800
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG048350, gene_TRIDC1BG054910 ... gene_TRIDC1BG061170, gene_TRIDC3AG045650, gene_TRIDC3BG023590, gene_TRIDC3BG051780
Poaceae	Triticum aestivum	23	TraesCS1A02G325500.1, TraesCS1A02G363600.1 ... TraesCS1B02G338600.1, TraesCS1B02G380700.1, TraesCS1D02G327100.1, TraesCS1D02G367900.1, TraesCS1D02G368600.1, TraesCS3A02G131600.1, TraesCS3A02G321000.1, TraesCS3B02G031800.1, TraesCS3B02G032600.1, TraesCS3B02G052500.1, TraesCS3B02G053100.1, TraesCS3B02G165200.1, TraesCS3B02G344800.1, TraesCS3D02G028700.1, TraesCS3D02G029200.1, TraesCS3D02G310300.1, TraesCS6A02G105700.1, TraesCS6B02G135000.1, TraesCS7A02G256100.1, TraesCS7B02G152700.1, TraesCS7D02G254500.1
Poaceae	Zea mays	4	Zm00001eb292320_P001, Zm00001eb342390_P002 ... Zm00001eb362900_P001, Zm00001eb369990_P001
Poaceae	Zoysia japonica	5	nbis-gene-11766, nbis-gene-11767, nbis-gene-12697 ... nbis-gene-14375, nbis-gene-24999
Poaceae	Zoysia macrostachya	5	Zma_g24404, Zma_g26906, Zma_g28703, Zma_g8504, Zma_g8764
Portulacaceae	Portulaca oleracea	4	evm.TU.LG04.1672, evm.TU.LG10.1158, evm.TU.LG19.563 ... evm.TU.LG24.25
Posidoniaceae	Posidonia oceanica	3	gene.Posoc03g11420, gene.Posoc04g19300, gene.Posoc09g05680
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_8_RagTag.1285, evm.TU.Scaffold_8_RagTag.1286
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-9058, nbisL1-mrna-9061, nbisL1-mrna-9062
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-19028
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-15363
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000018l.421
Rhizophoraceae	Kandelia obovata	1	Maker00002978
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-13340, nbisL1-mrna-13341
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-11138, nbisL1-mrna-11139
Salicaceae	Populus euphratica	6	populus_peu15272, populus_peu15273, populus_peu23891 ... populus_peu23895, populus_peu30628, populus_peu32931
Solanaceae	Lycium barbarum	5	gene-LOC132611111, gene-LOC132620346, gene-LOC132623605 ... gene-LOC132629141, gene-LOC132633440
Solanaceae	Solanum chilense	4	SOLCI001343200, SOLCI001343300, SOLCI001819000 ... SOLCI003839100
Solanaceae	Solanum pennellii	4	gene-LOC107002166, gene-LOC107014445, gene-LOC107016210 ... gene-LOC107017061
Tamaricaceae	Reaumuria soongarica	9	STRG.18917_chr07_-, STRG.18921_chr07_-, STRG.18923_chr07_- ... gene_10845, gene_10846, gene_155, gene_1697, gene_4839, gene_6767
Tamaricaceae	Tamarix chinensis	5	TC04G1639, TC08G1814, TC08G1816, TC08G1817, TC08G1820
Zosteraceae	Zostera marina	1	Zosma05g12300.v3.1