Basic Information
Locus ID:
GOSA_00014013
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig546 | 33436 | 67066 | - | GOSA_00014013 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.05 | 89,910.31 Da | 43.57 | 80.13 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 9 | 293 | 1.88852E-62 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 84 | 117 | 0.0028 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 123 | 159 | 1.4E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 205 | 243 | 1.8E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 9 | 44 | 0.014 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 665 | 821 | 2.5E-50 | IPR028021 |
| Pfam | PF00400 | WD domain, G-beta repeat | 165 | 201 | 1.2E-11 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 7 | 326 | 9.16E-68 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 200 | 3.3E-46 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 201 | 343 | 3.6E-24 | IPR015943 |
| SMART | SM00320 | WD40_4 | 78 | 117 | 0.025 | IPR001680 |
| SMART | SM00320 | WD40_4 | 204 | 243 | 5.6E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 120 | 159 | 1.6E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 246 | 284 | 0.76 | IPR001680 |
| SMART | SM00320 | WD40_4 | 162 | 201 | 5.3E-13 | IPR001680 |
| SMART | SM00320 | WD40_4 | 5 | 45 | 5.6E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 12 | 54 | 10.374778 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 169 | 206 | 14.371031 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 169 | 210 | 18.69591 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 127 | 168 | 14.953072 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 211 | 252 | 13.783434 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 85 | 119 | 11.101955 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 127 | 161 | 11.787407 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 12 | 44 | 8.597424 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 85 | 126 | 14.919653 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 211 | 246 | 10.970139 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 188 | 202 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 104 | 118 | 1.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 188 | 202 | 1.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 146 | 160 | 1.1E-6 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 1 | 825 | 20.413046 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 614 | 632 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 338 | 360 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 394 | 449 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 478 | 530 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 584 | 632 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 502 | 516 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08390.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021841902.1 | katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Spinacia oleracea] | 0 |
| F4KB17 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 OS=Arabidopsis thaliana OX=3702 GN=KTN80.3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RHA8 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Spinacia oleracea OX=3562 GN=SOVF_071810 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology