Basic Information
Locus ID:
GOSA_00013848
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig184 | 990556 | 993541 | - | GOSA_00013848 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.23 | 44,992.87 Da | 32.95 | 91.83 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00850 | Histone deacetylase domain | 73 | 295 | 3.1E-73 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 53 | 352 | 1.2E-103 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 15 | 364 | 3.9E-116 | IPR037138 |
| PRINTS | PR01271 | Histone deacetylase signature | 134 | 150 | 9.5E-39 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 194 | 207 | 9.5E-39 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 93 | 113 | 9.5E-39 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 211 | 229 | 9.5E-39 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 72 | 89 | 9.5E-39 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 147 | 162 | 2.1E-22 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 233 | 243 | 2.1E-22 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 115 | 138 | 2.1E-22 | IPR000286 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G44680.1 | histone deacetylase 9. Class I RPD3 type protein | 0 |
| RefSeq | XP_010692974.2 | histone deacetylase 9 isoform X3 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8H0W2 | Histone deacetylase 9 OS=Arabidopsis thaliana OX=3702 GN=HDA9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8BDF5 | Histone deacetylase OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_2g044990 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology