Basic Information
Locus ID:
GOSA_00013763
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig149 | 1569898 | 1588495 | - | GOSA_00013763 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 99,587.22 Da | 39.90 | 80.16 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00628 | PHD-finger | 548 | 590 | 6.1E-8 | IPR019787 |
| Pfam | PF16135 | Tify domain binding domain | 482 | 531 | 1.8E-13 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 288 | 343 | 2.4E-12 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 543 | 592 | 1.01E-14 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 773 | 866 | 9.45E-7 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 619 | 675 | 1.55E-5 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 618 | 680 | 2.2E-9 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 768 | 871 | 1.3E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 537 | 617 | 2.1E-16 | IPR013083 |
| SMART | SM00249 | PHD_3 | 621 | 678 | 0.0011 | IPR001965 |
| SMART | SM00249 | PHD_3 | 548 | 589 | 9.1E-13 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 619 | 680 | 8.635599 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 546 | 591 | 10.4245 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 549 | 588 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 111 | - | - |
| Coils | Coil | Coil | 80 | 107 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37520.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_010684186.1 | uncharacterized protein LOC104898779 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A0K9RIM7 | Increased DNA methylation 1 OS=Spinacia oleracea OX=3562 GN=SOVF_067560 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology