Basic Information
Locus ID:
GOSA_00013683
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Encoded by
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig441 | 2648004 | 2653451 | - | GOSA_00013683 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.46 | 110,808.57 Da | 58.69 | 69.83 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03108 | MuDR family transposase | 232 | 297 | 8.7E-15 | IPR004332 |
| Pfam | PF10536 | Plant mobile domain | 603 | 712 | 4.0E-12 | IPR019557 |
| Pfam | PF04434 | SWIM zinc finger | 377 | 406 | 1.5E-5 | IPR007527 |
| SMART | SM00575 | 26again6 | 383 | 410 | 1.7E-4 | IPR006564 |
| ProSiteProfiles | PS50966 | Zinc finger SWIM-type profile. | 376 | 408 | 9.890841 | IPR007527 |
| PRINTS | PR01217 | Proline rich extensin signature | 830 | 842 | 3.4E-11 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 866 | 882 | 3.4E-11 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 902 | 927 | 3.4E-11 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 884 | 901 | 3.4E-11 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 968 | 984 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 952 | 966 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 164 | 201 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 855 | 984 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 868 | 916 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 917 | 936 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48120.1 | hydrolases;protein serine/threonine phosphatases. | 0 |
| RefSeq | XP_021752051.1 | uncharacterized protein LOC110717612 [Chenopodium quinoa] | 0 |
| Q9LNG5 | Serine/threonine-protein phosphatase 7 long form homolog OS=Arabidopsis thaliana OX=3702 GN=MAIL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803N7L7 | Pentatricopeptide repeat-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 3 | Ah006594, Ah020201, Ah021231 |
| Amaranthaceae | Salicornia bigelovii | 130 | Sbi_jg10182, Sbi_jg10288, Sbi_jg10290, Sbi_jg10359 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg3014, Seu_jg6387 |
| Amaranthaceae | Suaeda aralocaspica | 10 | GOSA_00013683, GOSA_00016161, GOSA_00016589, GOSA_00016594 ... |