Basic Information
Locus ID:
GOSA_00013522
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig134 | 2391170 | 2392378 | + | GOSA_00013522 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.58 | 43,973.25 Da | 62.26 | 82.11 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16474 | RING-H2_RNF111_like | 159 | 201 | 2.09946E-18 | - |
| Pfam | PF13639 | Ring finger domain | 158 | 201 | 4.7E-12 | IPR001841 |
| SUPERFAMILY | SSF101447 | Formin homology 2 domain (FH2 domain) | 47 | 56 | 8.37E-5 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 153 | 207 | 3.53E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 119 | 206 | 5.7E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 159 | 200 | 6.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 159 | 201 | 12.1057 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 349 | 384 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 384 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33565.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021758655.1 | RING-H2 finger protein ATL52-like [Chenopodium quinoa] | 0 |
| Q8LFY8 | RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803MCK5 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology