Basic Information
Locus ID:
GOSA_00013462
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
DA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig134 | 1756117 | 1768402 | - | GOSA_00013462 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.49 | 129,266.04 Da | 47.84 | 81.76 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 141 | 193 | 1.79388E-28 | - |
| Pfam | PF12315 | Protein DA1 | 290 | 499 | 3.8E-100 | IPR022087 |
| Pfam | PF12854 | PPR repeat | 1039 | 1071 | 3.0E-7 | IPR002885 |
| Pfam | PF00412 | LIM domain | 141 | 196 | 1.9E-9 | IPR001781 |
| Pfam | PF13812 | Pentatricopeptide repeat domain | 652 | 709 | 0.0053 | IPR002885 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 167 | 222 | 3.18E-7 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 133 | 166 | 2.01E-7 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 566 | 807 | 1.1E-22 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 861 | 972 | 8.1E-10 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 973 | 1128 | 3.0E-26 | IPR011990 |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 134 | 198 | 1.4E-14 | - |
| SMART | SM00132 | lim_4 | 140 | 192 | 2.2E-13 | IPR001781 |
| SMART | SM00726 | uim | 86 | 105 | 0.38 | IPR003903 |
| SMART | SM00726 | uim | 45 | 64 | 0.09 | IPR003903 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 977 | 1009 | 6.9E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 1045 | 1078 | 3.2E-8 | IPR002885 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 86 | 105 | 9.255892 | IPR003903 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 973 | 1007 | 8.911594 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 665 | 699 | 8.867749 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 1043 | 1077 | 13.000159 | IPR002885 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 139 | 199 | 12.1672 | IPR001781 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 735 | 769 | 8.549871 | IPR002885 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 45 | 64 | 10.146433 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 141 | 175 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 431 | 454 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 83 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 431 | 457 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 83 | - | - |
| Coils | Coil | Coil | 78 | 98 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_010680936.1 | protein DA1-related 1 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A4Y7IBV3 | LIM zinc-binding domain-containing protein OS=Papaver somniferum OX=3469 GN=C5167_038462 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology