Basic Information
Locus ID:
GOSA_00013454
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig134 | 1679026 | 1679769 | + | GOSA_00013454 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.36 | 27,228.27 Da | 43.26 | 58.10 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 27 | 71 | 7.08278E-31 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 27 | 75 | 7.3E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 25 | 82 | 1.77E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 84 | 1.9E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 29 | 69 | 7.3E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 29 | 70 | 13.241681 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 44 | 53 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 115 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010680923.1 | E3 ubiquitin-protein ligase RNF185 [Beta vulgaris subsp. vulgaris] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QVW5 | RING-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_142590 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology