Basic Information
Locus ID:
GOSA_00012763
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
ER-associated misfolded protein catabolic process
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig423 | 129219 | 130985 | + | GOSA_00012763 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.13 | 50,350.12 Da | 43.70 | 59.91 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 233 | 405 | 6.8E-62 | IPR004854 |
| Gene3D | G3DSA:2.40.40.50 | - | 221 | 328 | 1.3E-32 | IPR042299 |
| Gene3D | G3DSA:3.10.330.10 | - | 329 | 403 | 3.1E-27 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 162 | 177 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 155 | 214 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 203 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G29070.2 | Ubiquitin fusion degradation UFD1 family protein. | 0 |
| RefSeq | XP_048496482.1 | ubiquitin recognition factor in ER-associated degradation protein 1 [Beta vulgaris subsp. vulgaris] | 0 |
| P70362 | Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Mus musculus OX=10090 GN=Ufd1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9RNV5 | Ubiquitin fusion degradation protein 1 homolog OS=Spinacia oleracea OX=3562 GN=SOVF_050890 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology