Basic Information
Locus ID:
GOSA_00012682
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
IQ-domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig523 | 2237421 | 2245160 | + | GOSA_00012682 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.12 | 60,986.87 Da | 47.51 | 72.57 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00612 | IQ calmodulin-binding motif | 400 | 412 | 0.1 | IPR000048 |
| Pfam | PF00612 | IQ calmodulin-binding motif | 329 | 340 | 0.14 | IPR000048 |
| ProSiteProfiles | PS50096 | IQ motif profile. | 325 | 354 | 6.5038 | IPR000048 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 458 | 476 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 458 | 479 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 530 | 545 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 493 | 545 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35670.1 | IQ-domain 33. | 0 |
| RefSeq | XP_010688949.2 | protein IQ-DOMAIN 33 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8L8M9 | Protein IQ-DOMAIN 33 OS=Arabidopsis thaliana OX=3702 GN=IQD33 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MCI1 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 8 | Ah009794, Ah009803, Ah009809, Ah009813, Ah033117, Ah035364 ... |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00012682, GOSA_00012684 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl21542, Sgl26859, Sgl46075, Sgl50775, Sgl66088, Sgl66212 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0004110, CQ.Regalona.r1.7BG0004120 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_019744 |