Basic Information
Locus ID:
GOSA_00012590
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig523 | 1356786 | 1364565 | + | GOSA_00012590 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.96 | 55,870.89 Da | 58.92 | 81.39 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 249 | 297 | 5.29173E-14 | - |
| Pfam | PF12906 | RING-variant domain | 249 | 296 | 3.8E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 245 | 300 | 1.19E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 233 | 304 | 4.4E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 248 | 297 | 1.6E-18 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 241 | 303 | 18.510334 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 179 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 179 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 472 | 505 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 490 | 505 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_019107349.2 | uncharacterized protein LOC104902636 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A0K9QGW0 | RING-CH-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_180040 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology