Basic Information
Locus ID:
GOSA_00012512
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
lysine-specific demethylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig523 | 603656 | 614935 | - | GOSA_00012512 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.36 | 182,333.11 Da | 45.38 | 62.65 | -0.98 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08879 | WRC | 56 | 94 | 1.1E-9 | IPR014977 |
| Pfam | PF02373 | JmjC domain, hydroxylase | 1308 | 1409 | 7.7E-15 | IPR003347 |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 872 | 1445 | 7.83E-34 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 1221 | 1435 | 3.7E-69 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 867 | 1104 | 1.8E-86 | - |
| SMART | SM00558 | cupin_9 | 981 | 1426 | 2.2E-76 | IPR003347 |
| ProSiteProfiles | PS51184 | JmjC domain profile. | 1000 | 1426 | 24.443523 | IPR003347 |
| ProSiteProfiles | PS51667 | WRC domain profile. | 54 | 98 | 15.388908 | IPR014977 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 728 | 743 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1460 | 1552 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1104 | 1123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 415 | 503 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 177 | 222 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 122 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1474 | 1490 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 247 | 402 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1090 | 1123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 177 | 402 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 442 | 472 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1491 | 1535 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 728 | 753 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1216 | 1250 | - | - |
| Coils | Coil | Coil | 212 | 232 | - | - |
| Coils | Coil | Coil | 366 | 386 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11950.1 | Transcription factor jumonji (jmjC) domain-containing protein. | 0 |
| RefSeq | XP_021842001.1 | lysine-specific demethylase JMJ25-like [Spinacia oleracea] | 0 |
| C0SUU8 | Lysine-specific demethylase JMJ26 OS=Arabidopsis thaliana OX=3702 GN=JMJ26 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RJ28 | Lysine-specific demethylase JMJ25-like OS=Spinacia oleracea OX=3562 GN=SOVF_061180 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology