Basic Information
Locus ID:
GOSA_00012479
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
SNF2 domain-containing protein helicase domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig523 | 265675 | 281203 | + | GOSA_00012479 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.02 | 126,024.77 Da | 45.24 | 79.14 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 294 | 658 | 1.47716E-79 | - |
| CDD | cd18793 | SF2_C_SNF | 916 | 1083 | 5.99173E-41 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 914 | 1074 | 2.4E-10 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 314 | 735 | 6.1E-66 | IPR000330 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 774 | 810 | 1.5E-4 | IPR018957 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 280 | 658 | 2.06E-44 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 772 | 824 | 1.06E-10 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 666 | 1130 | 1.63E-48 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 673 | 1130 | 1.1E-54 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 265 | 356 | 3.4E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 525 | 670 | 5.8E-32 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 766 | 855 | 1.0E-10 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 425 | 510 | 3.2E-9 | IPR038718 |
| SMART | SM00490 | helicmild6 | 928 | 1074 | 1.4E-5 | IPR001650 |
| SMART | SM00487 | ultradead3 | 290 | 629 | 1.7E-27 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 440 | 620 | 12.351292 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 898 | 1127 | 9.249141 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 774 | 813 | 10.895954 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 789 | 798 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 419 | 436 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 505 | 555 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 95 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 360 | 439 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_021735489.1 | helicase-like transcription factor CHR28 isoform X1 [Chenopodium quinoa] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QUG1 | Helicase-like transcription factor CHR28 OS=Spinacia oleracea OX=3562 GN=SOVF_139950 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology