Basic Information
Locus ID:
GOSA_00012158
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Short Name:
UPL4
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig327 | 601254 | 617593 | + | GOSA_00012158 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 140,750.16 Da | 49.62 | 90.97 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 867 | 1262 | 8.5652E-110 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 913 | 1264 | 1.6E-77 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 85 | 419 | 1.51E-5 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 859 | 1257 | 2.62E-91 | IPR035983 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1150 | 1262 | 1.6E-31 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 814 | 1040 | 7.0E-41 | - |
| SMART | SM00119 | hect_3 | 879 | 1264 | 8.9E-92 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 881 | 1264 | 60.36554 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 572 | 599 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 580 | 595 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_010667232.1 | E3 ubiquitin-protein ligase UPL4 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0J8B6J2 | HECT-type E3 ubiquitin transferase OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_007490 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology