Basic Information
Locus ID:
GOSA_00011930
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
transcriptional corepressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig240 | 2497324 | 2505843 | - | GOSA_00011930 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.47 | 81,068.64 Da | 51.40 | 66.33 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 467 | 743 | 5.26809E-54 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 711 | 743 | 0.2 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 626 | 661 | 0.036 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 506 | 537 | 3.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 469 | 495 | 0.0075 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 35 | 2.1E-6 | IPR006594 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 468 | 743 | 1.3E-54 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 595 | 743 | 9.3E-26 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 460 | 594 | 8.4E-29 | IPR015943 |
| SMART | SM00320 | WD40_4 | 705 | 743 | 0.0088 | IPR001680 |
| SMART | SM00320 | WD40_4 | 498 | 537 | 4.7E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 460 | 495 | 4.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 541 | 581 | 2.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 664 | 703 | 0.53 | IPR001680 |
| SMART | SM00320 | WD40_4 | 584 | 620 | 12.0 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0016 | IPR006594 |
| SMART | SM00320 | WD40_4 | 623 | 661 | 0.0027 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 470 | 504 | 9.372231 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 712 | 743 | 9.539323 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.40982 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 505 | 546 | 13.582925 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 505 | 540 | 11.233774 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 712 | 743 | 9.388329 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 482 | 496 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 524 | 538 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 291 | 369 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 105 | 121 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 105 | 125 | - | - |
| Coils | Coil | Coil | 85 | 110 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_021763452.1 | transcriptional corepressor LEUNIG_HOMOLOG-like isoform X1 [Chenopodium quinoa] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R1F4 | LisH domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_117780 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology