Basic Information
Locus ID:
GOSA_00011851
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
neutrophil clearance
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig240 | 1899452 | 1902660 | + | GOSA_00011851 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 101,332.62 Da | 34.77 | 90.54 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 584 | 859 | 6.4342E-95 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 325 | 363 | 3.5E-4 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 33 | 65 | 5.2E-5 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 580 | 854 | 5.1E-48 | IPR001245 |
| SUPERFAMILY | SSF52058 | L domain-like | 27 | 433 | 1.02E-45 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 566 | 869 | 1.95E-77 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 31 | 322 | 9.5E-71 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 326 | 451 | 9.0E-31 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 541 | 655 | 1.2E-33 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 656 | 872 | 2.4E-58 | - |
| SMART | SM00369 | LRR_typ_2 | 114 | 137 | 71.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 187 | 210 | 23.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 389 | 413 | 280.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 138 | 163 | 19.0 | IPR003591 |
| SMART | SM00364 | LRR_bac_2 | 91 | 111 | 35.0 | - |
| SMART | SM00220 | serkin_6 | 578 | 860 | 3.3E-42 | IPR000719 |
| SMART | SM00364 | LRR_bac_2 | 413 | 433 | 180.0 | - |
| SMART | SM00364 | LRR_bac_2 | 187 | 207 | 19.0 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 578 | 860 | 40.696747 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 703 | 715 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 584 | 606 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 534 | 555 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 540 | 555 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 451 | 476 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23750.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_010685103.2 | receptor-like kinase TMK4 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LK43 | Receptor-like kinase TMK4 OS=Arabidopsis thaliana OX=3702 GN=TMK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RIU5 | Protein kinase domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_061690 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology