Basic Information
Locus ID:
GOSA_00011393
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig43 | 1108618 | 1109418 | + | GOSA_00011393 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.02 | 29,284.48 Da | 67.66 | 75.45 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 218 | 255 | 4.82604E-8 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 216 | 260 | 1.8E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 214 | 262 | 1.83E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 214 | 265 | 2.7E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 218 | 255 | 1.3E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 218 | 256 | 10.33534 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 58 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03965.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010686766.2 | uncharacterized protein LOC104900931 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A8B8JPG8 | baculoviral IAP repeat-containing protein 7-like OS=Abrus precatorius OX=3816 GN=LOC113847540 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology