Basic Information
Locus ID:
GOSA_00011278
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig291 | 3159512 | 3168448 | - | GOSA_00011278 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 70,040.59 Da | 32.34 | 91.86 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00651 | BTB/POZ domain | 28 | 117 | 5.1E-7 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 210 | 464 | 5.4E-84 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 21 | 116 | 2.43E-16 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 16 | 120 | 2.2E-12 | IPR011333 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 210 | 488 | 82.003609 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 97 | 11.274735 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 584 | 612 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 495 | 518 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 584 | 625 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 495 | 523 | - | - |
| Coils | Coil | Coil | 534 | 554 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G14820.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_021729661.1 | BTB/POZ domain-containing protein NPY2-like [Chenopodium quinoa] | 0 |
| O80970 | Phototropic-responsive NPH3 family protein NPY2 OS=Arabidopsis thaliana OX=3702 GN=NPY2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803N177 | BTB/POZ domain-containing protein NPY4 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology