Basic Information
Locus ID:
GOSA_00011031
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Short Name:
NTMC2T2.1
Description:
Synaptotagmin-5-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig291 | 645627 | 657661 | + | GOSA_00011031 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 62,559.07 Da | 26.05 | 106.85 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 264 | 366 | 5.55979E-26 | - |
| CDD | cd00030 | C2 | 440 | 521 | 2.39326E-22 | - |
| Pfam | PF00168 | C2 domain | 263 | 366 | 6.6E-22 | IPR000008 |
| Pfam | PF00168 | C2 domain | 438 | 521 | 1.3E-18 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 69 | 248 | 1.4E-16 | IPR039010 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 434 | 521 | 6.4E-23 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 260 | 391 | 1.79E-27 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 254 | 390 | 3.5E-30 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 436 | 524 | 7.0E-23 | IPR035892 |
| SMART | SM00239 | C2_3c | 439 | 548 | 1.5E-13 | IPR000008 |
| SMART | SM00239 | C2_3c | 263 | 363 | 8.8E-21 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 421 | 549 | 17.054682 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 243 | 364 | 19.874056 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 67 | 249 | 29.548355 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 487 | 500 | 1.3E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 455 | 467 | 1.3E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 509 | 517 | 1.3E-6 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_021861099.1 | synaptotagmin-5-like [Spinacia oleracea] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QXK9 | Synaptotagmin-5-like OS=Spinacia oleracea OX=3562 GN=SOVF_135070 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology