Basic Information
Locus ID:
GOSA_00010992
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig291 | 166548 | 176103 | - | GOSA_00010992 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.64 | 125,581.93 Da | 44.88 | 78.61 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 928 | 962 | 0.0013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 505 | 543 | 0.072 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 466 | 500 | 0.0037 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 361 | 677 | 1.43E-42 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 845 | 1107 | 8.9E-37 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 524 | 704 | 1.1E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 779 | 1116 | 2.8E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 322 | 523 | 1.6E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 880 | 920 | 2.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 459 | 500 | 0.0014 | IPR001680 |
| SMART | SM00320 | WD40_4 | 353 | 392 | 0.97 | IPR001680 |
| SMART | SM00320 | WD40_4 | 414 | 453 | 2.1 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 9.8E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 636 | 677 | 190.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 503 | 544 | 0.0026 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1014 | 1055 | 24.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 8.3E-13 | IPR006595 |
| SMART | SM00320 | WD40_4 | 835 | 877 | 9.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 549 | 590 | 41.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 923 | 962 | 7.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 593 | 633 | 4.7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 466 | 509 | 10.909469 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.003936 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.608736 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 930 | 971 | 12.480124 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 930 | 964 | 10.205597 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 487 | 501 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1111 | 1139 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1121 | 1139 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_010687939.1 | topless-related protein 4 [Beta vulgaris subsp. vulgaris] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803LH73 | Topless-related protein 4-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology