Basic Information
Locus ID:
GOSA_00010921
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig117 | 2736773 | 2752905 | - | GOSA_00010921 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.61 | 141,428.20 Da | 53.91 | 78.66 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 801 | 857 | 7.758E-30 | - |
| Pfam | PF01426 | BAH domain | 521 | 634 | 3.4E-8 | IPR001025 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 818 | 855 | 2.9E-10 | IPR023780 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 861 | 1225 | 1.1E-37 | IPR001525 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 692 | 1225 | 1.47E-77 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 791 | 856 | 1.25E-11 | IPR016197 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 676 | 781 | 3.7E-12 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 441 | 620 | 2.0E-44 | IPR043151 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 1021 | 1191 | 7.8E-212 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 785 | 1242 | 7.8E-212 | - |
| SMART | SM00298 | chromo_7 | 801 | 860 | 2.9E-10 | IPR000953 |
| SMART | SM00439 | BAH_4 | 519 | 635 | 3.0E-18 | IPR001025 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 870 | 1222 | 2.7E-31 | IPR001525 |
| PIRSF | PIRSF037404 | DNMT1 | 672 | 763 | 4.7E-5 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 854 | 1117 | 3.7E-42 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 1147 | 1237 | 7.6E-23 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 56 | 277 | 1400.0 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 479 | 650 | 5.1E-7 | IPR017198 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 692 | 1232 | 46.620548 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 802 | 855 | 11.326701 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 519 | 635 | 17.911316 | IPR001025 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 872 | 884 | - | IPR018117 |
| ProSitePatterns | PS00095 | C-5 cytosine-specific DNA methylases C-terminal signature. | 1207 | 1225 | - | IPR031303 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 825 | 845 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 961 | 974 | 1.4E-10 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 693 | 709 | 1.4E-10 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 915 | 929 | 1.4E-10 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 66 | - | - |
| Coils | Coil | Coil | 102 | 122 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.2 | - | 0 |
| RefSeq | XP_021765549.1 | DNA (cytosine-5)-methyltransferase CMT3-like [Chenopodium quinoa] | 0 |
| Q94F87 | DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana OX=3702 GN=CMT2 PE=2 SV=3 | 0 | |
| TrEMBL | A0A0K9RVU1 | Cytosine-specific methyltransferase OS=Spinacia oleracea OX=3562 GN=SOVF_028590 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology