Basic Information
Locus ID:
GOSA_00010367
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
DNA mismatch repair protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig175 | 2561786 | 2574838 | - | GOSA_00010367 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.63 | 162,207.27 Da | 49.31 | 78.75 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08676 | MutL C terminal dimerisation domain | 1197 | 1358 | 8.3E-11 | IPR014790 |
| Pfam | PF03175 | DNA polymerase type B, organellar and viral | 34 | 136 | 8.0E-9 | IPR004868 |
| Pfam | PF01119 | DNA mismatch repair protein, C-terminal domain | 337 | 454 | 5.6E-7 | IPR013507 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 1 | 141 | 2.45E-12 | IPR043502 |
| SUPERFAMILY | SSF118116 | DNA mismatch repair protein MutL | 1197 | 1389 | 1.57E-15 | IPR037198 |
| SUPERFAMILY | SSF55874 | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 155 | 315 | 5.01E-11 | IPR036890 |
| SUPERFAMILY | SSF54211 | Ribosomal protein S5 domain 2-like | 313 | 456 | 6.83E-10 | IPR020568 |
| Gene3D | G3DSA:3.30.230.10 | - | 328 | 460 | 1.8E-19 | IPR014721 |
| Gene3D | G3DSA:3.30.1540.20 | - | 1201 | 1389 | 2.8E-23 | IPR042120 |
| Gene3D | G3DSA:3.30.1370.100 | - | 1241 | 1353 | 2.8E-23 | IPR042121 |
| Gene3D | G3DSA:3.30.565.10 | - | 146 | 323 | 1.6E-25 | IPR036890 |
| SMART | SM00853 | MutL_C_2 | 1198 | 1358 | 4.3E-18 | IPR014790 |
| SMART | SM01340 | DNA_mis_repair_2 | 328 | 456 | 4.7E-6 | IPR013507 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35520.2 | - | 0 |
| RefSeq | XP_021835540.1 | DNA mismatch repair protein MLH3 isoform X2 [Spinacia oleracea] | 0 |
| F4JN26 | DNA mismatch repair protein MLH3 OS=Arabidopsis thaliana OX=3702 GN=MLH3 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9RY32 | DNA_mis_repair domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_016200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg30944 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13363 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027286 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g135740 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12660, Sbi_jg53264 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8644 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00010367, GOSA_00010370 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl33601, Sgl38904, Sgl39152 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000229, gene:ENSEOMG00000001192 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6BG0025130 |
| Apiaceae | Apium graveolens | 1 | Ag4G01364 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G005460 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723997 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_07.2330.V1.1, AsparagusV1_07.2332.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G04508 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G35520.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024245m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g33300.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g087580.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0048 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0048 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g00100 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g03020 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6932 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.105, evm.TU.LG02.2882 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002291 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G06053 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.2854, BH03.3021, CH03.3210 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0503940.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_007153, gene-QYE76_007154 |
| Poaceae | Oryza coarctata | 2 | Oco17G011340, Oco18G011230 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g33250.1, LOC_Os09g37930.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G083600, gene-BS78_02G266400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0700777, Pt_Chr0700856 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G006660, Chr11G012670 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5BG055760 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G352800.1, TraesCS5B02G355000.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb104330_P001, Zm00001eb104340_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-52805 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29931 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG06.952, evm.TU.LG11.305, evm.TU.LG11.307 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g06690 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.23 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-127, nbisL1-mrna-162 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-5907, nbisL1-mrna-5961 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5837 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.1200 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006813 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6609 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2492 |
| Salicaceae | Populus euphratica | 2 | populus_peu14034, populus_peu14035 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621723 |
| Solanaceae | Solanum chilense | 7 | SOLCI000312100, SOLCI000501000, SOLCI001636400 ... |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107009320, gene-LOC107010216 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.25133_chr10_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G0836 |
| Zosteraceae | Zostera marina | 1 | Zosma06g11810.v3.1 |