Basic Information
Locus ID:
GOSA_00010231
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Short Name:
CMT1
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig175 | 1405526 | 1412075 | - | GOSA_00010231 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.10 | 94,876.07 Da | 34.35 | 77.35 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 383 | 434 | 3.99007E-25 | - |
| Pfam | PF01426 | BAH domain | 124 | 225 | 8.5E-12 | IPR001025 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 444 | 804 | 4.6E-33 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 384 | 433 | 8.2E-12 | IPR023780 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 371 | 440 | 2.57E-14 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 285 | 804 | 5.19E-75 | IPR029063 |
| Gene3D | G3DSA:2.30.30.490 | - | 62 | 225 | 4.3E-43 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 288 | 821 | 6.1E-234 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 597 | 770 | 6.1E-234 | - |
| SMART | SM00298 | chromo_7 | 383 | 437 | 1.4E-6 | IPR000953 |
| SMART | SM00439 | BAH_4 | 123 | 236 | 4.0E-12 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 384 | 432 | 12.955701 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 286 | 811 | 42.474323 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 123 | 236 | 18.837431 | IPR001025 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 402 | 422 | - | IPR023779 |
| ProSitePatterns | PS00095 | C-5 cytosine-specific DNA methylases C-terminal signature. | 786 | 804 | - | IPR031303 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 287 | 303 | 2.5E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 538 | 551 | 2.5E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 492 | 506 | 2.5E-11 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 263 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 279 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 281 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80740.1 | chromomethylase 1. ecotype Kl-0 chromomethylase (CMT1). A plant line expressing an RNAi construct directed against DMT4 has reduced agrobacterium-mediated tumor formation. | 0 |
| RefSeq | XP_010666617.2 | putative DNA (cytosine-5)-methyltransferase CMT1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9AXT8 | DNA (cytosine-5)-methyltransferase 1 OS=Zea mays OX=4577 GN=MET2A PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8B4R8 | DNA (cytosine-5-)-methyltransferase OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_003270 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology