Basic Information
Locus ID:
GOSA_00010198
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig175 | 1033865 | 1057898 | - | GOSA_00010198 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.29 | 256,417.73 Da | 41.10 | 87.71 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 834 | 956 | 9.18129E-6 | - |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 1342 | 1632 | 1.1E-13 | IPR009543 |
| Pfam | PF16909 | Vacuolar-sorting-associated 13 protein C-terminal | 1883 | 1986 | 3.1E-8 | IPR031645 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 414 | 581 | 2.4E-9 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 172 | 332 | 3.6E-10 | IPR009291 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 820 | 981 | 3.5E-5 | IPR035892 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.2 | - | 0 |
| RefSeq | XP_010679514.1 | uncharacterized protein LOC104894866 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q54LN2 | Intermembrane lipid transfer protein vps13D OS=Dictyostelium discoideum OX=44689 GN=vps13D PE=3 SV=1 | 0 | |
| TrEMBL | A0A803KY05 | C2 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology