Basic Information
Locus ID:
GOSA_00009627
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig83 | 3537150 | 3549658 | + | GOSA_00009627 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.45 | 108,443.43 Da | 39.52 | 103.79 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 438 | 474 | 3.8E-5 | IPR001810 |
| Pfam | PF00646 | F-box domain | 13 | 47 | 0.0015 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 11 | 60 | 1.22E-9 | IPR036047 |
| SUPERFAMILY | SSF52058 | L domain-like | 45 | 342 | 6.8E-10 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 413 | 792 | 3.37E-14 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 424 | 474 | 5.8E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 683 | 801 | 2.4E-5 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 141 | 361 | 3.3E-11 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 509 | 682 | 1.0E-7 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 55 | 5.1E-5 | - |
| SMART | SM00256 | fbox_2 | 441 | 481 | 0.019 | IPR001810 |
| SMART | SM00256 | fbox_2 | 17 | 57 | 6.9 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 11 | 59 | 9.100053 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G56410.1 | Protein with RNI-like/FBD-like domains. | 0 |
| RefSeq | XP_021841574.1 | F-box/FBD/LRR-repeat protein At1g78750-like isoform X2 [Spinacia oleracea] | 0 |
| Q9FM90 | Putative FBD-associated F-box protein At5g56410 OS=Arabidopsis thaliana OX=3702 GN=At5g56410 PE=4 SV=1 | 0 | |
| TrEMBL | A0A0K9RXB9 | F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_018110 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology