Basic Information
Locus ID:
GOSA_00009626
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig83 | 3516276 | 3526327 | + | GOSA_00009626 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 121,656.08 Da | 36.54 | 106.14 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 9 | 41 | 3.9E-5 | IPR001810 |
| Pfam | PF00646 | F-box domain | 504 | 544 | 0.0012 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 7 | 51 | 6.15E-10 | IPR036047 |
| SUPERFAMILY | SSF52058 | L domain-like | 626 | 866 | 2.52E-12 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 136 | 401 | 1.39E-12 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 502 | 542 | 1.3E-8 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 542 | 873 | 3.5E-15 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 117 | 379 | 6.5E-13 | IPR032675 |
| SMART | SM00256 | fbox_2 | 508 | 547 | 0.084 | IPR001810 |
| SMART | SM00256 | fbox_2 | 13 | 54 | 2.8 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 7 | 41 | 8.888098 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G03100.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_021841574.1 | F-box/FBD/LRR-repeat protein At1g78750-like isoform X2 [Spinacia oleracea] | 0 |
| Q501G5 | F-box protein At5g03100 OS=Arabidopsis thaliana OX=3702 GN=At5g03100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RXB9 | F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_018110 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology