Basic Information
Locus ID:
GOSA_00009534
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig83 | 2400172 | 2409644 | + | GOSA_00009534 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.88 | 97,475.65 Da | 62.83 | 69.07 | -0.86 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 810 | 848 | 5.04733E-16 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 808 | 854 | 1.9E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 796 | 855 | 3.05E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 796 | 861 | 3.0E-10 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 810 | 849 | 10.18781 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 435 | 470 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 108 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 701 | 732 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 439 | 470 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 91 | 106 | - | - |
| Coils | Coil | Coil | 739 | 766 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27950.1 | Ring/U-Box superfamily protein. | 0 |
| RefSeq | XP_021732900.1 | uncharacterized protein LOC110699684 [Chenopodium quinoa] | 0 |
| Q0MW30 | E3 ubiquitin-protein ligase NEURL1B OS=Mus musculus OX=10090 GN=Neurl1b PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9S214 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_008300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology