Basic Information
Locus ID:
GOSA_00009315
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Proteinaceous RNase P 1, chloroplastic
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig39 | 3372127 | 3377355 | - | GOSA_00009315 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.42 | 84,702.04 Da | 36.28 | 81.90 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 97 | 313 | 1.8E-66 | IPR033443 |
| Pfam | PF16953 | Protein-only RNase P | 355 | 544 | 1.5E-48 | IPR031595 |
| SUPERFAMILY | SSF47616 | GST C-terminal domain-like | 594 | 703 | 5.87E-13 | IPR036282 |
| Gene3D | G3DSA:3.40.50.11980 | - | 373 | 544 | 1.3E-186 | - |
| Gene3D | G3DSA:1.20.1050.10 | - | 596 | 717 | 4.0E-38 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 99 | 372 | 1.3E-186 | IPR011990 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 192 | 226 | 10.248873 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 95 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32230.1 | proteinaceous RNase P 1. RNase P able to cleave tRNA-like structures involved in the maturation of plant mitochondrial mRNAs. | 0 |
| RefSeq | XP_010669732.2 | proteinaceous RNase P 1, chloroplastic/mitochondrial [Beta vulgaris subsp. vulgaris] | 0 |
| Q66GI4 | Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PRORP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803M9H1 | ribonuclease P OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology