Basic Information
Locus ID:
GOSA_00009102
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig39 | 1100822 | 1101184 | - | GOSA_00009102 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.58 | 14,254.00 Da | 68.21 | 73.08 | -0.82 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 25 | 66 | 2.3E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 25 | 74 | 9.68E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 22 | 79 | 1.9E-6 | - |
| ProSiteProfiles | PS50181 | F-box domain profile. | 20 | 66 | 8.676143 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 26 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G17265.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_021853174.1 | F-box/kelch-repeat protein At3g23880-like [Spinacia oleracea] | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009102 |
| Poaceae | Echinochloa crus-galli | 2 | BH03.2855, CH03.3061 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6BG0482460 |
| Poaceae | Lolium multiflorum | 16 | gene-QYE76_006814, gene-QYE76_006815, gene-QYE76_006817 ... |
| Poaceae | Triticum aestivum | 1 | TraesCS5D02G310700.1.cds1 |