Basic Information
Locus ID:
GOSA_00008943
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig398 | 1534191 | 1535715 | - | GOSA_00008943 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.18 | 27,012.93 Da | 26.40 | 108.61 | 0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 66 | 97 | 0.047 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 102 | 136 | 0.003 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 17 | 241 | 3.66E-32 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 8 | 241 | 4.0E-31 | IPR015943 |
| SMART | SM00320 | WD40_4 | 60 | 97 | 2.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 16 | 53 | 18.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 100 | 137 | 9.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 143 | 184 | 33.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 67 | 100 | 9.124694 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 67 | 106 | 12.145943 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_021731198.1 | zinc finger CCCH domain-containing protein 48-like [Chenopodium quinoa] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803MB75 | Zinc finger CCCH domain-containing protein 48-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology