Basic Information
Locus ID:
GOSA_00008799
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Belongs to the eukaryotic ribosomal protein eS21 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig68 | 3480620 | 3482064 | - | GOSA_00008799 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.71 | 8,896.84 Da | 12.68 | 76.05 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01249 | Ribosomal protein S21e | 1 | 77 | 5.6E-38 | IPR001931 |
| Gene3D | G3DSA:3.30.1230.20 | - | 1 | 81 | 3.6E-40 | IPR038579 |
| PIRSF | PIRSF002148 | RPS21e | 1 | 81 | 3.5E-38 | IPR001931 |
| ProSitePatterns | PS00996 | Ribosomal protein S21e signature. | 11 | 19 | - | IPR018279 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27700.1 | Ribosomal protein S21e . | 0 |
| RefSeq | XP_021769286.1 | 40S ribosomal protein S21-like [Chenopodium quinoa] | 0 |
| P35687 | Small ribosomal subunit protein eS21 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS21 PE=3 SV=1 | 0 | |
| TrEMBL | A0A803M426 | 40S ribosomal protein S21 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg35775, jg8340 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_24351, gene_6330 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah033946, Ah035102 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g077850 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg16835, Sbi_jg21540, Sbi_jg21541, Sbi_jg22276 ... |
| Amaranthaceae | Salicornia europaea | 7 | Seu_jg121, Seu_jg16206, Seu_jg16207, Seu_jg18389, Seu_jg2 ... |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008799 |
| Amaranthaceae | Suaeda glauca | 11 | Sgl20786, Sgl25378, Sgl26168, Sgl30557, Sgl36122, Sgl37877 ... |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000017486, gene:ENSEOMG00000020833 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1BG0020690, CQ.Regalona.r1.2AG0022430 |
| Apiaceae | Apium graveolens | 2 | Ag1G01958, Ag8G01555 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G001570, COCNU_04G010070 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103715098, gene-LOC103715276, gene-LOC103718617 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.2102.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G29166, Ftri9G04755 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G53890.1, AT5G27700.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10005213m.g.v1.0, Thhalv10005214m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp2g16650.v2.2, Sp2g20860.v2.2, Sp5g08510.v2.2 |
| Brassicaceae | Brassica nigra | 8 | BniB02g079040.2N, BniB02p000267.2N, BniB04g004800.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq09G1161, Ceq09G1162 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl09G1249, Cgl09G1250 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g14440 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0001s00040.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g07230 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1313 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00007244, Pov_00015553 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G05747, Lb1G05810, Lb4G21548 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.3662, AH03.4022, BH01.4012, BH03.4357, CH01.4284 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_3AG0220720, gene-QOZ80_3BG0265820 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_038853, gene-QYE76_067936 |
| Poaceae | Oryza coarctata | 4 | Oco05G013350, Oco05G019770, Oco06G013080, Oco13G015480 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g46490.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_01G118800, gene-BS78_01G356800 ... |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0305194, Pt_Chr0305236 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr01G034480, Chr04G011190, Chr07G010560, Chr07G025140 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G245500, Tel4E01G251500 |
| Poaceae | Triticum dicoccoides | 8 | gene_TRIDC2AG013930, gene_TRIDC2BG016790 ... |
| Poaceae | Triticum aestivum | 10 | TraesCS2A02G115100.1, TraesCS2B02G059900.1 ... |
| Poaceae | Zea mays | 6 | Zm00001eb016600_P002, Zm00001eb090410_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-129, nbis-gene-15802, nbis-gene-1607 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g1223, Zma_g3036, Zma_g3648, Zma_g7051 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG05.522, evm.TU.LG10.39, evm.TU.LG17.33 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g32730, gene.Posoc02g08430 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.119, evm.TU.Scaffold_2_RagTag.2061 |
| Rhizophoraceae | Carallia pectinifolia | 5 | nbisL1-mrna-2738, nbisL1-mrna-2740, nbisL1-mrna-2838 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5133 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5200 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.54, evm.TU.utg000012l.87 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00006173, Maker00011476 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-12985, nbisL1-mrna-7872 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-107, nbisL1-mrna-16149 |
| Salicaceae | Populus euphratica | 2 | populus_peu13367, populus_peu15698 |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132615387, gene-LOC132622932, gene-LOC132626796 ... |
| Solanaceae | Solanum chilense | 2 | SOLCI002239700, SOLCI002398500 |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107015886, gene-LOC107017139, gene-LOC107022097 ... |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_17842, gene_7080 |
| Zosteraceae | Zostera marina | 3 | Zosma01g40640.v3.1, Zosma03g18490.v3.1, Zosma03g18850.v3.1 |