Basic Information
Locus ID:
GOSA_00008487
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig68 | 596508 | 602734 | + | GOSA_00008487 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.63 | 44,868.71 Da | 53.99 | 81.75 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14379 | UBA1_Rad23_plant | 172 | 221 | 4.25151E-31 | - |
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 8.39876E-31 | - |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 5.1E-18 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 178 | 216 | 3.3E-14 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 377 | 412 | 7.0E-11 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 295 | 350 | 1.4E-22 | IPR015360 |
| SUPERFAMILY | SSF46934 | UBA-like | 353 | 423 | 8.59E-15 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 175 | 229 | 2.01E-12 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 292 | 356 | 5.89E-22 | IPR036353 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 82 | 1.11E-22 | IPR029071 |
| Gene3D | G3DSA:1.10.8.10 | - | 370 | 417 | 8.3E-23 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 171 | 221 | 1.7E-22 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 286 | 351 | 3.8E-27 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 77 | 6.2E-27 | - |
| SMART | SM00727 | CBM | 291 | 336 | 1.5E-4 | IPR006636 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 8.7E-18 | IPR000626 |
| SMART | SM00165 | uba_6 | 178 | 218 | 1.1E-5 | IPR015940 |
| SMART | SM00165 | uba_6 | 377 | 414 | 1.2E-7 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 419 | 4.1E-110 | IPR004806 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 19.542631 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 176 | 219 | 12.691477 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 374 | 415 | 13.896332 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 403 | 418 | 4.3E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 388 | 402 | 4.3E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 321 | 343 | 4.3E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 371 | 387 | 4.3E-33 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 154 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 116 | 138 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 270 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 269 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_010692904.1 | ubiquitin receptor RAD23d isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | A0A803M4E8 | Ubiquitin receptor RAD23 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology