Basic Information
Locus ID:
GOSA_00008397
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
zinc finger (Ran-binding) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig10 | 4109298 | 4115041 | - | GOSA_00008397 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.96 | 98,690.96 Da | 52.61 | 46.19 | -1.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 405 | 432 | 1.6E-4 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 371 | 399 | 2.2E-10 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 364 | 400 | 2.16E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 363 | 401 | 5.4E-16 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 402 | 433 | 1.4E-8 | - |
| SMART | SM00547 | zf_4 | 373 | 397 | 2.9E-7 | IPR001876 |
| SMART | SM00547 | zf_4 | 406 | 430 | 2.1E-5 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 404 | 433 | 9.483959 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 371 | 400 | 10.274413 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 408 | 427 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 375 | 394 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 755 | 816 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 516 | 539 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 516 | 861 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 564 | 587 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 653 | 702 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 341 | 365 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 727 | 752 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 433 | 458 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 623 | 642 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_010674734.3 | uncharacterized protein LOC104890827 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9R1A6 | RanBP2-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_117940 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology