halophFGD

Basic Information

Locus ID: GOSA_00008342

Species & Taxonomic ID: Suaeda aralocaspica & 224144

Genome Assembly: GCA_016808085.1

Description: Zinc finger (C3HC4-type RING finger) family protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Contig10	3627411	3627959	+	GOSA_00008342

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.49	20,161.37 Da	38.48	95.71	0.11

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF57850	RING/U-box	79	124	1.48E-8	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	71	156	5.1E-8	IPR013083
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	80	121	10.468117	IPR001841

KEGG Pathway

KO Term:

K10664 (E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:2.3.2.27])

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_021771798.1	RING-H2 finger protein ATL11-like [Chenopodium quinoa]	0
TrEMBL	A0A803KPC5	RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	1	gene_12013
Amaranthaceae	Atriplex hortensis	1	Ah005893
Amaranthaceae	Salicornia bigelovii	1	Sbi_jg512
Amaranthaceae	Salicornia europaea	1	Seu_jg4129
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00008342, GOSA_00008343
Amaranthaceae	Suaeda glauca	4	Sgl24620, Sgl24646, Sgl29765, Sgl29773
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.4AG0009190, CQ.Regalona.r1.4BG0009300