Basic Information
Locus ID:
GOSA_00008257
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig10 | 2875736 | 2880019 | - | GOSA_00008257 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 68,112.93 Da | 51.13 | 98.26 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 30 | 67 | 2.9E-18 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 89 | 133 | 1.3E-23 | IPR041101 |
| SUPERFAMILY | SSF81383 | F-box domain | 16 | 62 | 2.75E-9 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 91 | 555 | 1.2E-31 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 67 | 596 | 1.0E-172 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 26 | 66 | 8.8E-19 | - |
| SMART | SM00367 | LRR_CC_2 | 392 | 416 | 0.29 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 150 | 175 | 460.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 125 | 149 | 11.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 452 | 475 | 460.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 30 | 71 | 8.4E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 24 | 61 | 9.523964 | IPR001810 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_021773054.1 | protein TRANSPORT INHIBITOR RESPONSE 1-like [Chenopodium quinoa] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803KPI2 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology