Basic Information
Locus ID:
GOSA_00007971
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
EIN3-binding F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig171 | 4322855 | 4324702 | + | GOSA_00007971 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.83 | 65,336.19 Da | 40.60 | 108.44 | 0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 238 | 260 | 0.39 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 530 | 553 | 0.3 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 186 | 209 | 1.2 | IPR001611 |
| Pfam | PF00646 | F-box domain | 49 | 89 | 5.0E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 43 | 86 | 2.09E-9 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 138 | 384 | 2.59E-35 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 272 | 614 | 1.96E-31 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 416 | 615 | 1.3E-32 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 114 | 224 | 4.9E-23 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 42 | 88 | 4.6E-7 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 225 | 413 | 4.4E-30 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 318 | 343 | 0.11 | IPR006553 |
| SMART | SM00256 | fbox_2 | 53 | 92 | 0.0071 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 212 | 237 | 5.6E-5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 134 | 159 | 160.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 238 | 263 | 0.089 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 186 | 211 | 1.2E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 425 | 450 | 1.5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 370 | 395 | 56.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 451 | 476 | 0.0011 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 160 | 185 | 0.039 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 505 | 530 | 7.5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 531 | 555 | 2.5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 556 | 581 | 7.8 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 478 | 503 | 0.0029 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 344 | 369 | 1.7 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25350.1 | EIN3-binding F box protein 2. Arabidopsis thaliana EIN3-binding F-box protein 2 (EBF2) mRNA. Part of the SCF complex, it is located in the nucleus and is involved in the ethylene-response pathway. | 0 |
| RefSeq | XP_010687976.2 | EIN3-binding F-box protein 2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q708Y0 | EIN3-binding F-box protein 2 OS=Arabidopsis thaliana OX=3702 GN=EBF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R6T0 | F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_099980 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology