Basic Information
Locus ID:
GOSA_00007788
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
proteinaceous RNase P 1, chloroplastic mitochondrial-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig171 | 2427418 | 2431618 | + | GOSA_00007788 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.92 | 106,524.71 Da | 36.08 | 66.35 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 318 | 377 | 8.0E-16 | IPR033443 |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 443 | 590 | 4.4E-55 | IPR033443 |
| Pfam | PF16953 | Protein-only RNase P | 633 | 857 | 7.0E-73 | IPR031595 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 441 | 860 | 1.1E-194 | IPR011990 |
| Gene3D | G3DSA:3.40.50.11980 | - | 649 | 823 | 1.1E-194 | - |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 503 | 537 | 8.648523 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 118 | 148 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 868 | 907 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 246 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 204 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 236 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 384 | 420 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 406 | 420 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 384 | 404 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32230.1 | proteinaceous RNase P 1. RNase P able to cleave tRNA-like structures involved in the maturation of plant mitochondrial mRNAs. | 0 |
| RefSeq | XP_021862317.1 | proteinaceous RNase P 3-like isoform X1 [Spinacia oleracea] | 0 |
| Q66GI4 | Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PRORP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RZA4 | ribonuclease P OS=Spinacia oleracea OX=3562 GN=SOVF_011940 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology