Basic Information
Locus ID:
GOSA_00007756
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig171 | 2088575 | 2090603 | + | GOSA_00007756 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.62 | 48,035.87 Da | 54.49 | 76.96 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 70 | 113 | 2.05818E-20 | - |
| Pfam | PF13639 | Ring finger domain | 70 | 113 | 4.6E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 50 | 118 | 1.26E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 45 | 121 | 3.1E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 71 | 112 | 3.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 71 | 113 | 12.076194 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28890.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021741908.1 | E3 ubiquitin-protein ligase ATL42-like, partial [Chenopodium quinoa] | 0 |
| Q5XF85 | E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9RH08 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_067600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology