Basic Information
Locus ID:
GOSA_00007651
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig171 | 898952 | 900181 | + | GOSA_00007651 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.54 | 44,930.18 Da | 60.41 | 72.86 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 131 | 174 | 1.69978E-19 | - |
| Pfam | PF13639 | Ring finger domain | 131 | 174 | 3.1E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 111 | 179 | 1.26E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 108 | 181 | 8.9E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 132 | 173 | 1.6E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 132 | 174 | 12.710573 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 363 | 387 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 203 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 196 | 251 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05810.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021724973.1 | RING-H2 finger protein ATL43-like [Chenopodium quinoa] | 0 |
| Q5EAE9 | RING-H2 finger protein ATL43 OS=Arabidopsis thaliana OX=3702 GN=ATL43 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803MPP2 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology