Basic Information
Locus ID:
GOSA_00007397
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Polygalacturonase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig13 | 3329807 | 3332532 | + | GOSA_00007397 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 49,329.90 Da | 43.52 | 72.71 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 89 | 403 | 3.2E-86 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 50 | 433 | 2.84E-123 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 39 | 439 | 7.0E-117 | IPR012334 |
| SMART | SM00710 | pbh1 | 267 | 287 | 7300.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 297 | 318 | 0.28 | IPR006626 |
| SMART | SM00710 | pbh1 | 217 | 243 | 420.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 244 | 265 | 46.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 326 | 347 | 5100.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 274 | 287 | - | IPR000743 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G02460.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_021734520.1 | polygalacturonase At1g48100-like [Chenopodium quinoa] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RUV7 | Polygalacturonase At1g80170 OS=Spinacia oleracea OX=3562 GN=SOVF_025850 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology