Basic Information
Locus ID:
GOSA_00007206
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig13 | 1463269 | 1466517 | + | GOSA_00007206 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 30,344.57 Da | 50.06 | 69.58 | -0.84 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 41 | 84 | 4.7E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 23 | 88 | 2.98E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 19 | 98 | 8.6E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 41 | 83 | 1.4E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 41 | 84 | 12.459772 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 59 | 68 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 203 | 255 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 183 | 265 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19430.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021772167.1 | uncharacterized protein LOC110736291 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A7C8YP93 | RING-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg16217, jg16352, jg8525 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9971 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005068 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g073650 |
| Amaranthaceae | Salicornia bigelovii | 15 | Sbi_jg17820, Sbi_jg17821, Sbi_jg17822, Sbi_jg17823 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg1012, Seu_jg1032, Seu_jg1033 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007206 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl59153 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010324, gene:ENSEOMG00000028024 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4BG0002290 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30050740 |
| Apiaceae | Apium graveolens | 1 | Ag5G02726 |
| Arecaceae | Cocos nucifera | 1 | COCNU_16G002070 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103701648, gene-LOC103716918 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.62.V1.1, AsparagusV1_07.1648.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G18129 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT5G12310.1, AT5G19430.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10014461m.g.v1.0, Thhalv10014482m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g24980.v2.2, Sp6g31330.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g049830.2N, BniB08g005900.2N, BniB08g009810.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1637 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1630 |
| Cymodoceaceae | Cymodocea nodosa | 4 | gene.Cymno02g17270, gene.Cymno02g17290, gene.Cymno02g17320 ... |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0538s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g16130 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.135 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00017209 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G15614 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.4545, BH02.4598, CH02.4644 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0046950, gene-QOZ80_1BG0096810 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0321940.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_058197 |
| Poaceae | Oryza coarctata | 2 | Oco01G030150, Oco02G031320 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g72480.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G405400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0605453 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G000870, Chr05G033950, Chr0G004180, Chr27G001190 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G804700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG070300, gene_TRIDC3BG079520 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G491300.2, TraesCS3B02G552300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb140640_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10809, nbis-gene-59006 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9394 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG08.1766, evm.TU.LG18.1694, evm.TU.LG20.190 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g05080 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.990 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-30031 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12446 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16353 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.591 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015875 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4495 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20804 |
| Salicaceae | Populus euphratica | 2 | populus_peu01781, populus_peu36038 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132626386, gene-LOC132643651 |
| Solanaceae | Solanum chilense | 1 | SOLCI001223000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107004662, gene-LOC107009388 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4710 |
| Tamaricaceae | Tamarix chinensis | 6 | TC02G2899, TC02G2902, TC02G2904, TC02G2906, TC02G2908 ... |
| Zosteraceae | Zostera marina | 2 | Zosma01g36450.v3.1, Zosma04g24900.v3.1 |