Basic Information
Locus ID:
GOSA_00006854
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig257 | 2007337 | 2016140 | - | GOSA_00006854 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.94 | 99,036.11 Da | 53.29 | 77.33 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 654 | 692 | 2.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 571 | 598 | 0.24 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 750 | 785 | 0.0017 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 568 | 887 | 8.74E-53 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 91 | 358 | 7.39E-21 | IPR011009 |
| Gene3D | G3DSA:2.130.10.10 | - | 545 | 890 | 4.5E-121 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 94 | 352 | 3.2E-24 | - |
| SMART | SM00220 | serkin_6 | 25 | 345 | 1.4E-4 | IPR000719 |
| SMART | SM00320 | WD40_4 | 844 | 888 | 16.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 794 | 833 | 4.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 704 | 743 | 0.29 | IPR001680 |
| SMART | SM00320 | WD40_4 | 613 | 649 | 8.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 652 | 692 | 3.7E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 564 | 599 | 0.39 | IPR001680 |
| SMART | SM00320 | WD40_4 | 747 | 785 | 2.5E-6 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 345 | 9.305132 | IPR000719 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 659 | 694 | 10.627413 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 754 | 788 | 12.647216 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 659 | 694 | 12.780889 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 754 | 788 | 10.521959 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 772 | 786 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 679 | 693 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 772 | 786 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 636 | 650 | 1.3E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 496 | 531 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 411 | 444 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 411 | 432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 503 | 531 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15354.3 | - | 0 |
| RefSeq | XP_010694977.2 | protein SPA1-RELATED 4 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LJR3 | Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8BAN3 | Protein kinase domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_4g096680 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology