Basic Information
Locus ID:
GOSA_00006744
Species & Taxonomic ID:
Suaeda aralocaspica & 224144
Genome Assembly:
GCA_016808085.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig257 | 989318 | 994349 | + | GOSA_00006744 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 122,121.59 Da | 36.50 | 102.77 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 605 | 847 | 3.06182E-55 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 877 | 1051 | 2.15467E-94 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 330 | 503 | 5.78641E-74 | - |
| Pfam | PF00005 | ABC transporter | 877 | 998 | 9.5E-18 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 348 | 398 | 5.3E-8 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 654 | 796 | 8.8E-15 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 878 | 1062 | 7.46E-49 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 113 | 307 | 8.63E-11 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 328 | 524 | 8.06E-36 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 654 | 852 | 6.67E-25 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 310 | 451 | 2.0E-30 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 85 | 309 | 2.8E-21 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 452 | 551 | 5.1E-17 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 566 | 853 | 4.9E-32 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 876 | 1069 | 5.4E-58 | IPR027417 |
| SMART | SM00382 | AAA_5 | 357 | 1044 | 6.4E-4 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 330 | 526 | 14.099123 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 654 | 835 | 17.886471 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 817 | 1067 | 13.792336 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 115 | 255 | 9.212283 | IPR011527 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 531 | 549 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 531 | 582 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 550 | 582 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021849835.1 | ABC transporter C family member 3-like [Spinacia oleracea] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803M645 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology